17546   Vdac1     Status: ES cell colonies screened / QC positives

GeneVdac1
Chromosome11
Deletion Start52,388,615
Deletion End52,374,305
Deletion Size14,311
Genome Build38
MGI IDMGI:106919
NCBI Gene ID22333
BAC ID56F7
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 11

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF52,374,35852,374,377CAAGGGCTACGGTGAGTGTC
TUP52,374,38352,374,408AGTCGGGAGCAATGGGAAGCCTTTCA
TUR52,374,42952,374,450GACCACCTCAAGTGTCACAAAG
TDF52,388,22552,388,245GGATAGCAGCAGGTCAGGTTG
TDP52,388,24952,388,273TACAGAGCACACCTTGAAGGGTCGC
TDR52,388,28452,388,302CCAGGTGCAGTCAGCAGTG

PCR Primers

PrimerSequence
SUCTGGGAATATGTCTTGGATG
SDAGTGATGGGCTAGGATGGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR93 bp++-
TDFTDR78 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17546A-B5VGB6C57BL/6NTac
17546A-B7VGB6C57BL/6NTac
17546A-C10VGB6C57BL/6NTac
17546A-G3VGB6C57BL/6NTac
17546A-G8VGB6C57BL/6NTac
17546A-D1VGB6C57BL/6NTac