Gene | Wars |
Chromosome | 12 |
Deletion Start | 108,888,483 |
Deletion End | 108,860,242 |
Deletion Size | 28,242 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 108,888,348 | 108,888,366 | TTGTCGGGCTCTCCGAAAC |
TUP | 108,888,326 | 108,888,347 | ATGCACCTCAGCCACCACGCCT |
TUR | 108,888,268 | 108,888,291 | GCCTCAGAAGCACATAAGAAGGAC |
TDF | 108,861,215 | 108,861,235 | AACCCACCCTGTCAAATCAAG |
TDP | 108,861,187 | 108,861,213 | CACACTCCCAATAGGCTTCTCACGTGG |
TDR | 108,861,126 | 108,861,149 | CATCAGAGAAGAAACAGCATCCAG |
PCR Primers
Primer | Sequence |
SU | TCTGGGCACTAGATGGGAAC |
SD | CACAATGATCCCTAGGAGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 99 bp | + | + | - |
TDF | TDR | 110 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17548A-A10 | VGB6 | C57BL/6NTac | |
17548A-H3 | VGB6 | C57BL/6NTac | |