Gene | Mta2 |
Chromosome | 19 |
Deletion Start | 8,951,666 |
Deletion End | 8,942,358 |
Deletion Size | 9,309 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 8,942,527 | 8,942,545 | TATCGGGCGCAGAGTCTAC |
TUP | 8,942,548 | 8,942,572 | CAGAGGCTTACCTGCAGCCGTAACG |
TUR | 8,942,578 | 8,942,599 | CGATCCAGTCACAGGTCTCAAG |
TDF | 8,951,210 | 8,951,229 | AGCAGCCAAGCGTCAGAAAC |
TDP | 8,951,231 | 8,951,256 | AAACCCTGCTGATGCTCCCAATCCAG |
TDR | 8,951,277 | 8,951,295 | TCCCTCCCTACCTGGTGTC |
PCR Primers
Primer | Sequence |
SU | CGAGCTCGTTCCGGAAGAAG |
SD | CGGACACCGGACAGTAAGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 73 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17645A-E9 | VGB6 | C57BL/6NTac | |
17645A-B5 | VGB6 | C57BL/6NTac | |
17645A-C6 | VGB6 | C57BL/6NTac | |
17645A-F10 | VGB6 | C57BL/6NTac | |
17645A-G6 | VGB6 | C57BL/6NTac | |