Gene | Zfp384 |
Chromosome | 6 |
Deletion Start | 125,036,815 |
Deletion End | 125,023,687 |
Deletion Size | 13,129 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 125,023,710 | 125,023,731 | CCCGTACTTCTGGCCTTCTATC |
TUP | 125,023,732 | 125,023,753 | CCCACAGTCTCAGGGCAGGTGA |
TUR | 125,023,795 | 125,023,816 | CAGCGTGACGGACTTACTACTC |
TDF | 125,036,288 | 125,036,310 | CATACCCATCTCCCTCAGGAAAC |
TDP | 125,036,317 | 125,036,346 | TATGAAACATATGCGCAAACACAACCCTCC |
TDR | 125,036,354 | 125,036,373 | GCTGCTTGCACTTGCTGTTG |
PCR Primers
Primer | Sequence |
SU | CTGTTCTCAGGCTGTGGATG |
SD | TGGTGGCATTTAGAGCTTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 107 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17717A-H6 | VGB6 | C57BL/6NTac | |
17717A-F3 | VGB6 | C57BL/6NTac | |
17717A-B5 | VGB6 | C57BL/6NTac | |
17717A-B7 | VGB6 | C57BL/6NTac | |
17717A-F1 | VGB6 | C57BL/6NTac | |
17717A-E2 | VGB6 | C57BL/6NTac | |