Gene | Gpn3 |
Chromosome | 5 |
Deletion Start | 122,382,330 |
Deletion End | 122,372,612 |
Deletion Size | 9,719 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 122,372,862 | 122,372,880 | GTCCAGCACCCAGACAGAG |
TUP | 122,372,881 | 122,372,904 | CTGCAGGACACCTTTGCTCCAGGA |
TUR | 122,372,914 | 122,372,937 | GGATATGAAGACACCTGGAACGAC |
TDF | 122,381,993 | 122,382,011 | CGGTGGGCATGGTCTGAAG |
TDP | 122,382,014 | 122,382,037 | CTGTCAGGGCCGCTTCTCTAACCC |
TDR | 122,382,071 | 122,382,091 | GACTGGTCGTATGGCAGGAAG |
PCR Primers
Primer | Sequence |
SU | CAACCGATAACGGCTCTCG |
SD | TACGTGTGTGGCTAGGTTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17745A-D1 | VGB6 | C57BL/6NTac | |
17745A-F10 | VGB6 | C57BL/6NTac | |
17745A-H6 | VGB6 | C57BL/6NTac | |