Gene | Rundc1 |
Chromosome | 11 |
Deletion Start | 101,434,340 |
Deletion End | 101,425,107 |
Deletion Size | 9,234 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 101,425,601 | 101,425,621 | TGAGGACCAGGTGAGTGTCTG |
TUP | 101,425,622 | 101,425,644 | CCGCTAGTTCCGGATGCGGATGA |
TUR | 101,425,663 | 101,425,682 | CAGCATCACCACCCACAAAC |
TDF | 101,434,018 | 101,434,038 | AGCCTTCTGACAGCCATCCAC |
TDP | 101,434,040 | 101,434,061 | TGGTGCTGACAGAGCATGACCC |
TDR | 101,434,089 | 101,434,108 | CCATGCACACCAACGCCTTC |
PCR Primers
Primer | Sequence |
SU | TTGGACTCCAGAAGGACACC |
SD | ACCGAGCTACACCTCTGGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 82 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17875A-C2 | VGB6 | C57BL/6NTac | |
17875A-C4 | VGB6 | C57BL/6NTac | |
17875A-E12 | VGB6 | C57BL/6NTac | |