Gene | Phf6 |
Chromosome | X |
Deletion Start | 52,953,596 |
Deletion End | 52,916,602 |
Deletion Size | 36,995 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 52,916,669 | 52,916,692 | GAGACAAGGAATGTGGACAGTTAC |
TUP | 52,916,698 | 52,916,723 | TCTGAAAACCAGAAGGTGGCAGCACA |
TUR | 52,916,724 | 52,916,742 | ACTCACCATGCACTTGTGG |
TDF | 52,953,243 | 52,953,264 | CAAGTTCTGGGTGTCTGTTGTC |
TDP | 52,953,265 | 52,953,292 | TCCTTCTGACAATAAGCATGTGGGCCTA |
TDR | 52,953,359 | 52,953,378 | AGCAGAGGATGTTGGGTCTC |
PCR Primers
Primer | Sequence |
SU | GTCCTCAGGCTCACCTTGTG |
SD | CTCTCTCTGTCCCACGAACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 136 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17883A-C1 | VGB6 | C57BL/6NTac | |
17883A-E1 | VGB6 | C57BL/6NTac | |
17883A-E12 | VGB6 | C57BL/6NTac | |
17883A-G4 | VGB6 | C57BL/6NTac | |