Gene | Taf2 |
Chromosome | 15 |
Deletion Start | 55,071,926 |
Deletion End | 55,040,365 |
Deletion Size | 31,562 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 55,071,897 | 55,071,917 | GGCTTAGAGTCCTCCAGGATG |
TUP | 55,071,867 | 55,071,894 | CAGGAAGAAAGGAGACAAGGGCTTCGAA |
TUR | 55,071,806 | 55,071,824 | TCAGAGCAGGGCGAGAAAC |
TDF | 55,040,845 | 55,040,864 | GGCAAGGCAGTAAGCAACAC |
TDP | 55,040,809 | 55,040,838 | ATCCAGAGTAGACAGTGAAGGTCTGGGTTA |
TDR | 55,040,783 | 55,040,803 | ACACAGTTTCAGCACTGGTTC |
PCR Primers
Primer | Sequence |
SU | CCAGACGAGAAATCCCAAAC |
SD | GATGTATCAGTCTCTCTATAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 112 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17957A-E12 | VGB6 | C57BL/6NTac | |
17957A-E4 | VGB6 | C57BL/6NTac | |
17957A-H1 | VGB6 | C57BL/6NTac | |