Gene | Gnb5 |
Chromosome | 9 |
Deletion Start | 75,340,231 |
Deletion End | 75,311,398 |
Deletion Size | 28,834 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 75,311,592 | 75,311,613 | GTGGCCGACAAGTTACATAGAG |
TUP | 75,311,620 | 75,311,647 | TGTAGGATGAGTTCCCAAGCTCTAGGAA |
TUR | 75,311,650 | 75,311,668 | TGCCAGGCAGACATCAGAG |
TDF | 75,339,697 | 75,339,719 | GGTTCTTGGTACTCACTGCTTTG |
TDP | 75,339,721 | 75,339,744 | TCATCACCCTGTAGACGGGCTTCA |
TDR | 75,339,761 | 75,339,779 | CCAGCCTGGTTTCCTCATC |
PCR Primers
Primer | Sequence |
SU | CCAAGGATCCGTTGAAAGC |
SD | TTCCTGTAGTATTTTCTGTTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17991A-F7 | VGB6 | C57BL/6NTac | |
17991A-H8 | VGB6 | C57BL/6NTac | |