Gene | Ywhae |
Chromosome | 11 |
Deletion Start | 75,764,740 |
Deletion End | 75,733,031 |
Deletion Size | 31,710 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 75,733,685 | 75,733,704 | CTTCTGGTGAGGGTGGAGTG |
TUP | 75,733,706 | 75,733,729 | TTGGAAATCACTGCAGAGCCTCCC |
TUR | 75,733,760 | 75,733,782 | GGCCCAAAGGAAGAAATCCAATC |
TDF | 75,764,072 | 75,764,094 | CTCCATAACCAAGGGCTTCACTC |
TDP | 75,764,105 | 75,764,133 | AATCTGCTGTTTGGCCTAACTGGCTACCA |
TDR | 75,764,153 | 75,764,177 | TGGTGTTTAGGAAGATGTGCTACTG |
PCR Primers
Primer | Sequence |
SU | GTTCCAGCCTTTTCTGGC |
SD | AGTGTGGCCGGAGACAATAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 98 bp | + | + | - |
TDF | TDR | 106 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18059A-A11 | VGB6 | C57BL/6NTac | |
18059A-E1 | VGB6 | C57BL/6NTac | |
18059A-H3 | VGB6 | C57BL/6NTac | |
18059A-D6 | VGB6 | C57BL/6NTac | |
18059A-B8 | VGB6 | C57BL/6NTac | |