Gene | Phka2 |
Chromosome | X |
Deletion Start | 160,523,425 |
Deletion End | 160,502,830 |
Deletion Size | 20,596 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | TGAGAGGACCCTATGACCAC |
TUP | | | TCTGGTTGCTGCTTTACAGCCAACA |
TUR | | | CTGATGCTCTGTGCCCAGAAG |
TDF | | | CAGCCAGCCATGACCAGAAG |
TDP | | | TGCCTGGGTACGGGACAATATCTATAGCA |
TDR | | | CCTCATCACGGTCAGCATTC |
PCR Primers
Primer | Sequence |
SU | GCCCAGTCTAGGTTCTGTCG |
SD | TTGGTACATGTGGGAGATGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18954A-B10 | VGB6 | C57BL/6NTac | |
18954A-C5 | VGB6 | C57BL/6NTac | |
18954A-C12 | VGB6 | C57BL/6NTac | |
18954A-E1 | VGB6 | C57BL/6NTac | |
18954A-G4 | VGB6 | C57BL/6NTac | |