| Gene | Deaf1 |
| Chromosome | 7 |
| Deletion Start | 141,327,567 |
| Deletion End | 141,297,504 |
| Deletion Size | 30,064 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | | | ACCACCTGCCTTGTCCTC |
| TUP | | | TCCTGCTGCTTCCTGGGAGCT |
| TUR | | | CATGTGACCCATCTGTGCTCTC |
| TDF | | | GCCACTGTGCCTGTAATTCTAAC |
| TDP | | | AGCAGCTGAGTACGGTGGCACATACC |
| TDR | | | TCATGCCTCTGCCTCCTG |
PCR Primers
| Primer | Sequence |
| SU | AGCAAGAAACGCTCGTAAGC |
| SD | AACAAGAGGATTGCTGGAGG |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 19193A-B7 | VGB6 | C57BL/6NTac | |
| 19193A-C1 | VGB6 | C57BL/6NTac | |
| 19193A-D2 | VGB6 | C57BL/6NTac | |
| 19193A-D8 | VGB6 | C57BL/6NTac | |
| 19193A-E1 | VGB6 | C57BL/6NTac | |
