| Gene | Sepp1 |
| Chromosome | 15 |
| Deletion Start | 3,279,718 |
| Deletion End | 3,274,677 |
| Deletion Size | 5,042 |
| Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | | | CAATGCTAAACTCAGAGGGCAAAG |
| TUP | | | TGACAGTGGTTGCTCTTCTTCAAGCCA |
| TUR | | | TGCAGAAGACACAAGTATCAGC |
| TDF | | | AGGCTCATAGCCACCACAAAC |
| TDP | | | CCACAACAAACATGGGCAGGAGCA |
| TDR | | | GCCCTGGTTGCTGATTCTC |
PCR Primers
| Primer | Sequence |
| SU | CTTTCCCAGAGAGTTGCCTG |
| SD | CAAGCTATCCAACAGAAACCC |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 19333A-C5 | VGB6 | C57BL/6NTac | |
| 19333A-F6 | VGB6 | C57BL/6NTac | |
| 19333A-G3 | VGB6 | C57BL/6NTac | |
| 19333A-G12 | VGB6 | C57BL/6NTac | |
